Difference between revisions of "Software"
From Bioinformatics Lab
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| − | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN | + | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN: cancer gene discovery via network analysis of somatic mutation data''' |
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| + | [[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN: Network-assisted prediction of disease pathways in model organisms''' | ||
=='''Other Network Biology tools'''== | =='''Other Network Biology tools'''== | ||
Revision as of 12:14, 4 March 2017
Co-functional networks and hypothesis generation servers
Human and Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum | Triticum aestivum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your co-functional networks for all other species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: a web server for network-based boosting of human genome-wide association data
MUFFINN: cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)
