Difference between revisions of "Software"
From Bioinformatics Lab
| Line 86: | Line 86: | ||
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only) | [[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only) | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | |||
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | =='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | ||
[[WMI|<big>'''Project Page'''</big>]] | [[WMI|<big>'''Project Page'''</big>]] | ||
Revision as of 12:19, 4 March 2017
Co-functional networks and hypothesis generation servers
Human and Animals
|
|
|
|
|
| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
|
|
|
|
|
| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum | Triticum aestivum |
Fungi
|
|
| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
|
|
|
| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your co-functional networks for all other species
JiffyNet: Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST: A reference database of human TF-target interactions
RIDDLE: Network-assisted Gene Set Analysis (human only)
