Difference between revisions of "Software"
From Bioinformatics Lab
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[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | ||
'''JiffyNet''': Instant gene network building server for newly sequenced species | '''JiffyNet''': Instant gene network building server for newly sequenced species | ||
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=='''Network-based servers for Disease Research'''== | =='''Network-based servers for Disease Research'''== | ||
Revision as of 13:58, 1 August 2017
Co-functional networks and hypothesis generation servers
Human and Animal models
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST: A reference database of human TF-target interactions
RIDDLE: Network-assisted Gene Set Analysis (human only)
