Difference between revisions of "Software"
From Bioinformatics Lab
| Line 2: | Line 2: | ||
=='''Co-functional networks and hypothesis generation servers'''== | =='''Co-functional networks and hypothesis generation servers'''== | ||
| − | ==''Human and | + | ==''Human and Laboratory Animals''== |
{|border="0" width="500" | {|border="0" width="500" | ||
|align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] | |align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] | ||
| Line 54: | Line 54: | ||
|} | |} | ||
| − | + | ==''Build your own co-functional networks''== | |
| − | + | ||
| − | + | ||
| − | == | + | |
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | ||
'''JiffyNet''': Instant gene network building server for newly sequenced species | '''JiffyNet''': Instant gene network building server for newly sequenced species | ||
Revision as of 14:00, 1 August 2017
Co-functional networks and hypothesis generation servers
Human and Laboratory Animals
|
|
|
|
|
| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
|
|
|
|
|
|
| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
|
|
| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
|
|
|
| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST: A reference database of human TF-target interactions
RIDDLE: Network-assisted Gene Set Analysis (human only)
