Difference between revisions of "Software"
From Bioinformatics Lab
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[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | ||
'''JiffyNet''': Instant gene network building server for newly sequenced species | '''JiffyNet''': Instant gene network building server for newly sequenced species | ||
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| + | =='''Transcriptional Regulatory Networks'''== | ||
| + | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': A reference database of human TF-target interactions | ||
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| + | [[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only) | ||
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Revision as of 14:03, 1 August 2017
Co-functional networks and hypothesis generation servers
Human and Laboratory Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Transcriptional Regulatory Networks
TRRUST: A reference database of human TF-target interactions
Network-based servers for Disease Research
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
