Software
From Bioinformatics Lab
Co-functional networks and hypothesis generation servers
Human and Animals
Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
Arabidopsis thaliana | Oryza sativa | Glycine max |
Fungi
Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
Pseudomonas aeruginosa | Escherichia coli |
Building your network for all other species
JiffyNet:Instant gene network building server for newly sequenced species |
for any sequenced species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data
MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)