Software

Human and Laboratory Animals

Homo sapiens	Mus musculus	Danio rerio	Drosophila melanogaster	Caenorhabditis elegans

Plants

Arabidopsis thaliana	Zea mays	Oryza sativa	Triticum aestivum	Glycine max	Solanum lycopersicum

Fungi

Saccharomyces cerevisiae	Cryptococcus neoformans

Bacteria

Pseudomonas aeruginosa	Escherichia coli	Xanthomonas oryzae pv. oryzae

Build your own co-functional networks

JiffyNet: Instant gene network building server for newly sequenced species

Network-based servers for Disease Research

COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)

GWAB: A web server for network-based boosting of human genome-wide association data

MUFFINN: Cancer gene discovery via network analysis of somatic mutation data

MORPHIN: Network-assisted prediction of disease pathways in model organisms

Other Network Biology tools

TRRUST: A reference database of human TF-target interactions

RIDDLE: Network-assisted Gene Set Analysis (human only)

Domain-based PPI networks by Weighted Mutual Information (WMI)

Project Page