Difference between revisions of "People:JH Shin"

From Bioinformatics Lab
Jump to: navigation, search
(Publications)
(Publications)
 
(29 intermediate revisions by one user not shown)
Line 4: Line 4:
 
|
 
|
 
===Junha Shin===
 
===Junha Shin===
*'''Ph.D candidate''', Combined master’s and doctorate program, ''Yonsei university'', Dept. of Biotechnology (09/2008 – Now)
+
*'''Ph.D''', Dept. of Biotechnology, Yonsei University (09/2008 – 02/2014)
Theme : Systems / Network Biology
+
: '''Thesis''': Improved methods of functional gene network construction by reinforced genomic context information
*Combined master’s and doctorate program, ''Yonsei university'', Dept. of Biology (03/2005 – 08/2008)
+
*Combined M.S & Ph.D program, Dept. of Biology, Yonsei University (03/2005 – 08/2008)
Advisor: Prof. Tae H. Lee<br>
+
: ''Theme'' : ''Molecular Biological / Proteomic analysis of modifications and functions of IAPs and NF-κB in human cancer cells''
Theme : Molecular Biological / Proteomic analysis of modifications and functions of IAPs and NF-κB in human cancer cells
+
*'''B.S''', Dept. of Biology, Yonsei University (03/1998 – 02/2005, ''mandatory military service'' : 06/2000 – 08/2002)
*'''B.S''', ''Yonsei University'', Dept. of Biology (03/1998 – 02/2005, ''mandatory military service'' : 06/2000 – 08/2002)
+
 
|}
 
|}
  
 
==Current Research Interests==
 
==Current Research Interests==
*Systems biology, Data mining and interpretation of biological themes.
+
*Systems Biology and Network Biology
*Gene network construction and analysis for various model organisms.
+
*Genetic architecture interpretation
 
+
*Genomics and Epigenetics
==Other (Research) Interests==
+
*Interpretation of genetic interactions and epistasis.
+
*Interpretation and remedy of autoimmune diseases.
+
*All that artistic and intellectual things.
+
  
 
==Publications==
 
==Publications==
*  '''Junha Shin''', Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. ''Mol. BioSyst.'', 10 (1), 24 - 29., (2014)
+
*  Hanhae Kim, Kwang-Woo Jung, Shinae Maeng, Ying-Lien Chen, '''Junha Shin''', Jung Eun Shim, Sohyun Hwang, Guilhem Janbon, Taeyup Kim, Joseph Heitman, Yong-Sun Bahn and Insuk Lee, Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans. ''Sci Rep. 5: 8767. (2015)'',  doi: 10.1038/srep08767
*  Hanhae Kim, '''Junha Shin''', Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, ''Nucleic Acids Research'',
+
*  Hanhae Kim, Jung Eun Shim, '''Junha Shin''' and Insuk Lee, EcoliNet: a database of cofunctional gene network for Escherichia coli. ''Database 2015: bav001. (2015)'', doi: 10.1093/database/bav001
*  Lee Chae, Insuk Lee, '''Junha Shin''', and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. ''Current Opinion in Plant Biology'', ''15:1-8 (2012)''
+
*  Tak Lee, Sunmo Yang, Eiru Kim, Younhee Ko, Sohyun Hwang, '''Junha Shin''', Jung Eun Shim, Hongseok Shim, Hyojin Kim, Chanyoung Kim and Insuk Lee, AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, ''Nucleic Acids Research, 43 (D1): D996-D1002 (2015)''
*  Insuk Lee, Ben Lehner, Tanya Vavouri, '''Junha Shin''', Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. ''Genome Research'', ''20(8), pp1143-1153 (2010)''
+
*  Ara Cho, '''Junha Shin''', Sohyun Hwang, Chanyung Kim, Hongsuk Shim, Hyojin Kim, Hanhae Kim, Insuk Lee, WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, ''Nucleic Acids Research, 42 (Web Server issue), W76 - 82 (2014)''
*  Hyung-Seung Jin, Hyung-Sun Park, '''Jun-Ha Shin''', Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. ''Biochemical and Biophysical Research Communications'', ''412(3), pp454-459 (2011)''
+
*  '''Junha Shin''', Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. ''Mol. BioSyst., 10 (1), 24 - 29 (2014)''
 +
*  Hanhae Kim, '''Junha Shin''', Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, ''Nucleic Acids Research, 42 (D1), D731-D736 (2014)''
 +
*  Lee Chae, Insuk Lee, '''Junha Shin''', and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. ''Current Opinion in Plant Biology, 15:1-8 (2012)''
 +
*  Hyung-Seung Jin, Hyung-Sun Park, '''Jun-Ha Shin''', Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. ''Biochemical and Biophysical Research Communications, 412 (3), 454-459 (2011)''
 +
*  Insuk Lee, Ben Lehner, Tanya Vavouri, '''Junha Shin''', Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. ''Genome Research, 20 (8), 1143-1153 (2010)''

Latest revision as of 15:00, 9 March 2015

People Junha Shin.jpg

[edit] Junha Shin

  • Ph.D, Dept. of Biotechnology, Yonsei University (09/2008 – 02/2014)
Thesis: Improved methods of functional gene network construction by reinforced genomic context information
  • Combined M.S & Ph.D program, Dept. of Biology, Yonsei University (03/2005 – 08/2008)
Theme : Molecular Biological / Proteomic analysis of modifications and functions of IAPs and NF-κB in human cancer cells
  • B.S, Dept. of Biology, Yonsei University (03/1998 – 02/2005, mandatory military service : 06/2000 – 08/2002)

[edit] Current Research Interests

  • Systems Biology and Network Biology
  • Genetic architecture interpretation
  • Genomics and Epigenetics

[edit] Publications

  • Hanhae Kim, Kwang-Woo Jung, Shinae Maeng, Ying-Lien Chen, Junha Shin, Jung Eun Shim, Sohyun Hwang, Guilhem Janbon, Taeyup Kim, Joseph Heitman, Yong-Sun Bahn and Insuk Lee, Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans. Sci Rep. 5: 8767. (2015), doi: 10.1038/srep08767
  • Hanhae Kim, Jung Eun Shim, Junha Shin and Insuk Lee, EcoliNet: a database of cofunctional gene network for Escherichia coli. Database 2015: bav001. (2015), doi: 10.1093/database/bav001
  • Tak Lee, Sunmo Yang, Eiru Kim, Younhee Ko, Sohyun Hwang, Junha Shin, Jung Eun Shim, Hongseok Shim, Hyojin Kim, Chanyoung Kim and Insuk Lee, AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, Nucleic Acids Research, 43 (D1): D996-D1002 (2015)
  • Ara Cho, Junha Shin, Sohyun Hwang, Chanyung Kim, Hongsuk Shim, Hyojin Kim, Hanhae Kim, Insuk Lee, WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, Nucleic Acids Research, 42 (Web Server issue), W76 - 82 (2014)
  • Junha Shin, Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. Mol. BioSyst., 10 (1), 24 - 29 (2014)
  • Hanhae Kim, Junha Shin, Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, Nucleic Acids Research, 42 (D1), D731-D736 (2014)
  • Lee Chae, Insuk Lee, Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. Current Opinion in Plant Biology, 15:1-8 (2012)
  • Hyung-Seung Jin, Hyung-Sun Park, Jun-Ha Shin, Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. Biochemical and Biophysical Research Communications, 412 (3), 454-459 (2011)
  • Insuk Lee, Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. Genome Research, 20 (8), 1143-1153 (2010)
Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox