Difference between revisions of "Software"

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=='''TRRUST: A reference database of human TF-target interactions'''==
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[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
  
=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
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[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
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=='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''==
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[[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] MUFFINN (MUtations For Functional Impact on Network Neighbors).
  
  
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=='''TRRUST: A reference database of human TF-target interactions'''==
+
=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
+
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
 
+
 
+
=='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''==
+
[[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] MUFFINN (MUtations For Functional Impact on Network Neighbors).
+
  
  
 
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''==
 
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''==
 
[[WMI|<big>'''Project Page'''</big>]]
 
[[WMI|<big>'''Project Page'''</big>]]

Revision as of 15:26, 3 June 2016

Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Animal

MouseNetLogo.png WormNetv3.jpg Flynet.png Tools HumanNetLogo.jpg
Mus musculus Caenorhabditis elegans Drosophila melanogaster Homo sapiens

Plant

Aranet v2.jpg RiceNetv2 logo.png
Arabidopsis thaliana Oryza sativa

Microbe

Pseudomonas logo.jpg EcoliNet.png Tools YesatNetLogo.jpg CryptoNet.png
Pseudomonas aeruginosa Escherichia coli Saccharomyces cerevisiae Cryptococcus neoformans


TRRUST: A reference database of human TF-target interactions

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.


MUFFINN: cancer gene discovery via network analysis of somatic mutation data

Cover title muffinn.png MUFFINN (MUtations For Functional Impact on Network Neighbors).


MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.


JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species


RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.


Domain-based PPI networks by Weighted Mutual Information (WMI)

Project Page

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