Difference between revisions of "Software"

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(Other Network Biology tools)
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[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions.
 
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions.
 
 
 
  
 
=='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''==
 
=='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''==

Revision as of 16:02, 22 October 2016

Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Human and Animals

Tools HumanNetLogo.jpg MouseNetLogo.png Danionet logo.png Flynet.png WormNetv3.jpg
Homo sapiens Mus musculus Danio rerio Drosophila melanogaster Caenorhabditis elegans

Plants

Aranet v2.jpg RiceNetv2 logo.png Soynetlogo.png
Arabidopsis thaliana Oryza sativa Glycine max

Fungi

Tools YesatNetLogo.jpg CryptoNet.png
Saccharomyces cerevisiae Cryptococcus neoformans

Bacteria

Pseudomonas logo.jpg EcoliNet.png
Pseudomonas aeruginosa Escherichia coli



Other Network Biology tools

Coexpedia.png COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH).


TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions.

MUFFINN: cancer gene discovery via network analysis of somatic mutation data

Cover title muffinn.png MUFFINN (MUtations For Functional Impact on Network Neighbors).



MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.



JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species



RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.



Domain-based PPI networks by Weighted Mutual Information (WMI)

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