Difference between revisions of "Software"

From Bioinformatics Lab
Jump to: navigation, search
Line 47: Line 47:
  
  
=='''Build your networks for all other species'''==
+
=='''Build your co-functional networks for all other species'''==
 
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] '''JiffyNet:Instant gene network building server for newly sequenced species'''
 
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] '''JiffyNet:Instant gene network building server for newly sequenced species'''
  

Revision as of 11:02, 24 December 2016

Co-functional networks and hypothesis generation servers

Human and Animals

Tools HumanNetLogo.jpg MouseNetLogo.png Danionet logo.png Flynet.png WormNetv3.jpg
Homo sapiens Mus musculus Danio rerio Drosophila melanogaster Caenorhabditis elegans

Plants

Aranet v2.jpg RiceNetv2 logo.png Soynetlogo.png
Arabidopsis thaliana Oryza sativa Glycine max

Fungi

Tools YesatNetLogo.jpg CryptoNet.png
Saccharomyces cerevisiae Cryptococcus neoformans

Bacteria

Pseudomonas logo.jpg EcoliNet.png
Pseudomonas aeruginosa Escherichia coli


Build your co-functional networks for all other species

Jiffynetlogo4 small.jpg JiffyNet:Instant gene network building server for newly sequenced species




Network-based servers for Disease Research

Coexpedia.png COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)


Cover title muffinn.png MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data


Logo morphin.png MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms




Other Network Biology tools

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions


Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)




Domain-based PPI networks by Weighted Mutual Information (WMI)

Project Page

Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox