Difference between revisions of "Software"
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− | ==''' | + | =='''Network Medicine Tools '''== |
− | [[File: | + | [[File:HumanNet_logo_with_title.png|150px|link=http://www.inetbio.org/humannet]]'''HumanNet''': Human gene networks for disease research |
+ | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': Curated TF-target interaction networks in human and mouse | ||
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[[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN''': Cancer gene discovery via network analysis of somatic mutation data | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN''': Cancer gene discovery via network analysis of somatic mutation data | ||
[[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB''': A web server for network-based boosting of human genome-wide association data | [[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB''': A web server for network-based boosting of human genome-wide association data | ||
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[[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA''': Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH) | [[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA''': Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH) | ||
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[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN''': Network-assisted prediction of disease pathways in model organisms | [[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN''': Network-assisted prediction of disease pathways in model organisms | ||
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[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only) | [[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only) | ||
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=='''Co-functional Gene Networks'''== | =='''Co-functional Gene Networks'''== | ||
− | =='' | + | ==''Laboratory Animals''== |
− | {|border="0" width=" | + | {|border="0" width="400" |
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|align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]] | |align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]] | ||
|align="center"|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]] | |align="center"|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]] | ||
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|align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]] | |align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]] | ||
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|align="center"|''Mus musculus'' | |align="center"|''Mus musculus'' | ||
|align="center"|''Danio rerio'' | |align="center"|''Danio rerio'' | ||
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|align="center"|Methicillin-resistant ''Staphylococcus aureus (human pathogen)'' | |align="center"|Methicillin-resistant ''Staphylococcus aureus (human pathogen)'' | ||
|align="center"|''Klebsiella pneumoniae (human pathogen)'' | |align="center"|''Klebsiella pneumoniae (human pathogen)'' | ||
− | |align="center"|''Escherichia coli ( | + | |align="center"|''Escherichia coli (popular lab/factory bacterial species)'' |
|align="center"|''Xanthomonas oryzae pv. oryzae (rice pathogen)'' | |align="center"|''Xanthomonas oryzae pv. oryzae (rice pathogen)'' | ||
|} | |} | ||
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+ | =='''Network-augmented GWAS Analysis for Arabidopsis'''== | ||
+ | [[File:araGWAB_logo.png|150px|link=http://www.inetbio.org/aragwab]] | ||
+ | '''araGWAB''': genome-wide association boosting for ''Arabidopsis thaliana'' | ||
Revision as of 16:18, 13 August 2018
Network Medicine Tools
HumanNet: Human gene networks for disease research
TRRUST: Curated TF-target interaction networks in human and mouse
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
GWAB: A web server for network-based boosting of human genome-wide association data
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
Co-functional Gene Networks
Laboratory Animals
Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Network-augmented GWAS Analysis for Arabidopsis
araGWAB: genome-wide association boosting for Arabidopsis thaliana
Domain-based PPI networks by Weighted Mutual Information (WMI)